CaliAli motion correction

CaliAli_motion_correction

function CaliAli_options = CaliAli_motion_correction(varargin)

Description

CaliAli_motion_correction: Perform rigid and non-rigid motion correction on video files.

This function applies motion correction to a set of input video files. It performs both rigid and non-rigid motion correction, interpolates dropped frames, squares borders, and saves the corrected video as a .mat file.

After motion correction, you can refine the region of interest with CaliAli_crop to remove static borders or unused regions before detrending and alignment.

Function Inputs:

Parameter Name	Type	Description
varargin	Variable-length input argument list	Variable input arguments, which are parsed into CaliAli_options.

Function Outputs:

Parameter Name	Type	Description
CaliAli_options	Updated structure containing the motion correction parameters.	-

Example usage:

CaliAli_options = CaliAli_motion_correction();   % Interactive file selection
CaliAli_options = CaliAli_motion_correction(CaliAli_options);   % Using predefined options