Welcome to the CaliAli Documentation
CaliAli is a comprehensive suite designed for extracting neural signals from one-photon calcium imaging data collected across multiple sessions in free-moving conditions. CaliAli incorporates all the necessary modules to extract long-term tracked calcium signals from raw video sessions.
Key Features
The CaliAli pipeline follows the following steps
- Downsampling and conversion of video to CaliAli format.
- Motion Correction.
- Automatic Detrending and Preprocessing.
- Alignment of Sessions.
- Neural Signal Extraction from concatenated videos with a computationally efficient approach.
- Post-processing and Evaluation